Ok, so you did your homework before starting. Good job.
If you shorten the length of the valve guide in the bowl, have a machine shop install new valve guides per the comment above. If you don't shorten the valve guide, then you may get by without having a machinist involved. Personally, I'd shorten the guides and grind the bowls so there's a tear-drop shape around the guide boss (like AFR's). Also, if you're grinding the sides of the bowls, be very careful around the valve seat. You don't want to put any cutter marks on the seat that have to be ground out...that's taking life out of the head. Hope this helps. Post some pics of your before and after work!
My $0.02.
Here's a pic of one of my C9OE 351W comb chambers:
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