Well what do ya know! My eyes must be going bad because those pistons didn't look like they had that kind of dish in them from the picture!

Well, at least now you know exactly what you have. According to JE, you actually have a 348 (.040 over) and are still right at 9:1 with 61cc heads. I would imagine that you have 5.4" rods. Never hurts to be sure though!
You must have called Holley at 4:01!
Anyway, as long as the rods are what you think they are and Holley says that 9:1 is okay for your blower, I'm with dfree383, I would go with what you have.
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'67 Mustang Coupe
424W-KB Forged 10.2:1-AFR 205's-Victor Jr.-Mighty Demon 825-Comp Cams hyd roller.236/.242 .555/.576-Miller rockers-Hooker Super Comps-Gene Hughes AOD-3.55 Posi-4 wheel discs-400rwhp/405rwtq